In the origin story, the ship escapes a black hole by firing off all its nuclear weapons (each of which is supposed to be insanely powerful.) Somehow, more energy (which is well known to be equivalent to mass, thanks to Einstein circa 1905,) is supposed to temporarily weaken a black hole. In short, to answer the OP's question, strictly speaking, none. The notion that it got worse after Wolfe left strikes me as purely mythical. It did get much, much cheaper in fifth season, to the point they didn't do space shows anymore!
What Christopher said.All of Season 1; the first 12 episodes of season 2 plus episodes 20 ("The Knight, Death, and the Devil") and 21 ("Immaculate Perception"); and any season 3 episode written by Zack Stentz & Ashley Edward Miller ("Cui Bono," "The Lone and Level Sands," "The Unconquerable Man," "The Dark Backward," "Point of the Spear," "Twilight of the Idols," "Day of Judgment, Day of Wrath"). The thing was, Zack & Ash were holdovers from the original writing staff, and they continued to write the show as it was originally meant to be, even though the others on the writing staff were writing a completely different, much more incoherent and lowbrow show. The Zack/Ash episodes were undermined by rewrites in some cases (especially "The Dark Backward"), but overall it's like there were two or three different, alternating versions of Andromeda being released in S3, and the Zack/Ash version was the only good one. (There were two other holdovers from the original staff, Matt Kiene and Joe Reinkemeyer, but once Robert Hewitt Wolfe left, the quality of their episodes plummeted for some reason. Their "Immaculate Perception" is great, but that one was written and produced while RHW was still in charge and then delayed until late in the season.)
Also episode 18 of season 3, "Deep Midnight's Voice," has a terrific subplot involving Tyr, but the other plotline is horrible. Much the same can be said of the season-3 finale, which has some great Dylan-Tyr stuff in the midst of an otherwise insanely stupid tale.
And yeah, there is a cheese factor in the first two seasons, but that's the fault of the production, not the writing. The show had great concepts and excellent writers, and a pretty good cast, but unfortunately Majel Roddenberry sold it to Tribune Entertainment, a company more concerned with cutting costs than making quality TV, so the production values were poor. And that same penny-pinching mentality led to the firing of the showrunner after a season and a half (though Robert Hewitt Wolfe held out longer than most of Tribune's other series creators/developers, who rarely lasted more than a single season before getting kicked out), and his replacement by a successor who simply didn't get it. The problem was that RHW wanted to make a sophisticated, thought-provoking hard science fiction saga with a rich, evolving story arc, but Tribune wanted to make a lowbrow, inexpensive piece of action fluff. It was a mismatch from the start, the same mismatch that destroyed Earth: Final Conflict.
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