The saucer windows have always bugged me, and it really doesn't seem plausible to me that they would build all those windows at that height. TOS Connie has the same problem too, though it is less obvious as there are not those stripes at the saucer rim. And of course Franz Joseph famously just downscaled pretty much everything by 20% to make stuff fit in his blueprints. Shuttle bays, TMP cargo deck and reck deck, these just do not fit. The ships would work better if they were 20 to 33% larger. Of course in Kelvinprise scales you run in problems too, as you will either need to have huge amounts of nothing between the decks, or exactly every other deck bizarrely missing all the windows.